BEAST 2 Help Me Choose

BEAST 2 Help Me Choose Tree log -- mode

Tree log – mode

Logging mode, one of autodetect, compound, tree. For tree logs, tree is most appropriate.

  • autodetect = automatically detect whether to use compound or tree mode. If there is only 1 entry and it is a tree, tree mode is set, otherwise compound mode is set.
  • compound = compound logger that produces a tab delimited file that can be interpreted by Tracer.
  • tree = tree logger that produces a NEXUS tree file that can be read by DensiTree, TreeAnnotator, etc. Logging a tree in compound mode just logs the tree height.

See also trace log mode, screen log mode.

Bayesian evolutionary analysis by sampling trees

Disclaimer: The above is the opinion of the author RB. If you do not agree, or spot a mistake, contact the author, or discuss this in the issues area or raise a new issue. A link will be added from this page to make sure others can find it.

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