BEAST 2 Help Me Choose

BEAST 2 Help Me Choose Trace log -- mode

Trace log – mode

Logging mode, one of autodetect, compound, tree. For trace logs, autodetect or compound is most appropriate.

  • autodetect = automatically detect whether to use compound or tree mode. If there is only 1 entry and it is a tree, tree mode is set, otherwise compound mode is set.
  • compound = compound logger that produces a tab delimited file that can be interpreted by Tracer.
  • tree = tree logger that produces a NEXUS tree file that can be read by DensiTree, TreeAnnotator, etc. Logging a tree in compound mode just logs the tree height.

See also tree log mode, screen log mode.

Bayesian evolutionary analysis by sampling trees

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