BEAST 2 Help Me Choose

BEAST 2 Help Me Choose Cluster tree -- cluster type

Cluster tree – cluster type

This it the type of hierarchical clustering algorithm used for generating initial tree. Should be one of

  • single single linke clustering
  • average average link clustering
  • complete complete link clustering
  • upgma unweighted pair group method with arithmetic mean (UPGMA), equals average link clustering
  • mean mean link clustering
  • centroid centroid link clustering
  • ward measures increase in variance
  • adjcomplete adjusted complete link
  • neighborjoining neighbour joining algorithm
  • neighborjoining2 corrects tree for tip data, unlike plain neighborjoining

The default average is the same as upgma.

See also hierarchical clustering, UPGMA, neighbour joining.

Bayesian evolutionary analysis by sampling trees

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